Batch fetching doing N+1 Query when NamedQuery is called after a NativeQuery in JBoss EAP 7

Issue

Batch fetching doing N+1 Query when NamedQuery is called after a NativeQuery inside a transaction in the JBoss EAP 7

       List<MyEntity> myEntities = entityManager.createNamedQuery(MyEntity.FIND_ALL, MyEntity.class).getResultList();

        String sql = "select u.* from MyEntity u";
        Query nativeQuery = entityManager.createNativeQuery(sql);
         logger.info("############# Executing Native Query #####################");
         List<MyEntity> myEntityNativeQuery = nativeQuery.getResultList();

        //myEntity.myEntityTwo is configured with @BatchSize . 
        for(MyEntity entity : myEntities){
            entity.getMyEntityTwo().size();
        }