ipa-server-certinstall command failed with the error "ScriptError: Peer's certificate issuer is not trusted (SEC_ERROR_UNKNOWN_ISSUER)"

Issue

Customer has a IPA server without the CA component installed.They are using CA certificate signed by an external certificate.
Currently customer is in the process of updating the new server certificate using "ipa-server-certinstall" commands however process is failing with the following error :

/usr/sbin/ipa-server-certinstall -v -d  /root/ipa_cert_update/server.crt /root/server_private.key  -p password --pin=pin

ScriptError: Peer's certificate issuer is not trusted ((SEC_ERROR_UNKNOWN_ISSUER) Peer's Certificate issuer is not recognized.). Please run ipa-cacert-manage install and ipa-certupdate to install the CA certificate.
ipa.ipaserver.install.ipa_server_certinstall.ServerCertInstall: ERROR: Peer's certificate issuer is not trusted ((SEC_ERROR_UNKNOWN_ISSUER) Peer's Certificate issuer is not recognized.). Please run ipa-cacert-manage install and ipa-certupdate to install the CA certificate.

Customer indicated one of the Intermediate CA certificates were renewed recently.