In IPA-AD trust environment some secondary IPA based Posix groups are missing

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Issue

Logging in as an AD user most/a lot of times, some secondary IPA based Posix groups are missing.
We have created an environment with Red Hat IDM and a trust to Active Directory and we are experiencing problems with AD users that are members of different external groups.

Environment

Red Hat IdM with trust setup to Active Directory
ipa-4.2.0-15.el7_2.3

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