SSH container doesn't contain all required libraries

Issue

• We created a SSH container with the command:

fabric:container-create-ssh --jvm-opts "-Xms1024m -Xmx2048m" --host 10.0.2.51 --user jboss --private-key /home/jboss/dev-certificate.pem --profile fabric --path /data csrmpublic

• We experience a strange problem when we try to deploy a bundle that contains a persistence unit. When we deploy the bundle everything works fine, but when we stop and start the container we see the below exceptions: the container cannot find some redhat libraries, If we check the system folder of ssh container, we see that the libraries are missing. It seems that when we create the ssh container, all the required system libraries are not copied.

• How can we solve the issue? As workaround we manually copied the libraries from the root container, but we don't think this is a good solution :-)

2015-10-06 06:12:40,627 | WARN  | nload-2-thread-3 | AetherBasedResolver              | 13 - io.fabric8.fabric-maven - 1.2.0.redhat-133 | Error resolving artifactorg.hibernate:hibernate-osgi:jar:4.2.19.Final-redhat-1:Could not find artifact org.hibernate:hibernate-osgi:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
org.eclipse.aether.resolution.ArtifactResolutionException: Could not find artifact org.hibernate:hibernate-osgi:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:459)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:262)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:239)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveArtifact(DefaultRepositorySystem.java:295)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolve(AetherBasedResolver.java:498)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolveFile(AetherBasedResolver.java:453)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolveFile(AetherBasedResolver.java:438)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.download(AetherBasedResolver.java:414)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.agent.download.impl.MavenDownloadTask.download(MavenDownloadTask.java:33)[68:io.fabric8.fabric-agent:1.2.0.redhat-133]
        at io.fabric8.agent.download.impl.AbstractRetryableDownloadTask.run(AbstractRetryableDownloadTask.java:40)[68:io.fabric8.fabric-agent:1.2.0.redhat-133]
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)[:1.7.0_55]
        at java.util.concurrent.FutureTask.run(FutureTask.java:262)[:1.7.0_55]
        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:178)[:1.7.0_55]
        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:292)[:1.7.0_55]
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)[:1.7.0_55]
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)[:1.7.0_55]
        at java.lang.Thread.run(Thread.java:744)[:1.7.0_55]
Caused by: org.eclipse.aether.transfer.ArtifactNotFoundException: Could not find artifact org.hibernate:hibernate-osgi:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$6.wrap(WagonRepositoryConnector.java:1012)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$6.wrap(WagonRepositoryConnector.java:1004)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:725)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:67)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        ... 3 more
2015-10-06 06:12:41,644 | INFO  | ool-409-thread-1 | RetryExec                        | 13 - io.fabric8.fabric-maven - 1.2.0.redhat-133 | I/O exception (org.apache.http.NoHttpResponseException) caught when processing request to {s}->https://sit.mobility-managed.com:443: The target server failed to respond
2015-10-06 06:12:41,644 | INFO  | ool-409-thread-1 | RetryExec                        | 13 - io.fabric8.fabric-maven - 1.2.0.redhat-133 | Retrying request to {s}->https://sit.mobility-managed.com:443
2015-10-06 06:12:45,965 | WARN  | nload-2-thread-1 | AetherBasedResolver              | 13 - io.fabric8.fabric-maven - 1.2.0.redhat-133 | Error resolving artifactorg.hibernate:hibernate-core:jar:4.2.19.Final-redhat-1:Could not find artifact org.hibernate:hibernate-core:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
org.eclipse.aether.resolution.ArtifactResolutionException: Could not find artifact org.hibernate:hibernate-core:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:459)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:262)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:239)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveArtifact(DefaultRepositorySystem.java:295)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolve(AetherBasedResolver.java:498)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolveFile(AetherBasedResolver.java:453)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolveFile(AetherBasedResolver.java:438)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.download(AetherBasedResolver.java:414)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.agent.download.impl.MavenDownloadTask.download(MavenDownloadTask.java:33)[68:io.fabric8.fabric-agent:1.2.0.redhat-133]
        at io.fabric8.agent.download.impl.AbstractRetryableDownloadTask.run(AbstractRetryableDownloadTask.java:40)[68:io.fabric8.fabric-agent:1.2.0.redhat-133]
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)[:1.7.0_55]
        at java.util.concurrent.FutureTask.run(FutureTask.java:262)[:1.7.0_55]
        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:178)[:1.7.0_55]
        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:292)[:1.7.0_55]
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)[:1.7.0_55]
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)[:1.7.0_55]
        at java.lang.Thread.run(Thread.java:744)[:1.7.0_55]
Caused by: org.eclipse.aether.transfer.ArtifactNotFoundException: Could not find artifact org.hibernate:hibernate-core:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$6.wrap(WagonRepositoryConnector.java:1012)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$6.wrap(WagonRepositoryConnector.java:1004)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:725)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:67)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        ... 3 more
2015-10-06 06:12:56,391 | WARN  | nload-2-thread-2 | AetherBasedResolver              | 13 - io.fabric8.fabric-maven - 1.2.0.redhat-133 | Error resolving artifactorg.hibernate:hibernate-entitymanager:jar:4.2.19.Final-redhat-1:Could not find artifact org.hibernate:hibernate-entitymanager:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
org.eclipse.aether.resolution.ArtifactResolutionException: Could not find artifact org.hibernate:hibernate-entitymanager:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:459)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:262)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:239)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.internal.impl.DefaultRepositorySystem.resolveArtifact(DefaultRepositorySystem.java:295)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolve(AetherBasedResolver.java:498)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolveFile(AetherBasedResolver.java:453)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.resolveFile(AetherBasedResolver.java:438)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.maven.url.internal.AetherBasedResolver.download(AetherBasedResolver.java:414)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at io.fabric8.agent.download.impl.MavenDownloadTask.download(MavenDownloadTask.java:33)[68:io.fabric8.fabric-agent:1.2.0.redhat-133]
        at io.fabric8.agent.download.impl.AbstractRetryableDownloadTask.run(AbstractRetryableDownloadTask.java:40)[68:io.fabric8.fabric-agent:1.2.0.redhat-133]
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)[:1.7.0_55]
        at java.util.concurrent.FutureTask.run(FutureTask.java:262)[:1.7.0_55]
        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:178)[:1.7.0_55]
        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:292)[:1.7.0_55]
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)[:1.7.0_55]
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)[:1.7.0_55]
        at java.lang.Thread.run(Thread.java:744)[:1.7.0_55]
Caused by: org.eclipse.aether.transfer.ArtifactNotFoundException: Could not find artifact org.hibernate:hibernate-entitymanager:jar:4.2.19.Final-redhat-1 in karaf-default (file:/data/csrmpublic/fabric8-karaf-1.2.0.redhat-133/system/)
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$6.wrap(WagonRepositoryConnector.java:1012)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$6.wrap(WagonRepositoryConnector.java:1004)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:725)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        at org.eclipse.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:67)[13:io.fabric8.fabric-maven:1.2.0.redhat-133]
        ... 3 more