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Nikto is an excellent common gateway interface (CGI) script scanner. Nikto not only checks for CGI vulnerabilities but does so in an evasive manner, so as to elude intrusion detection systems. It comes with thorough documentation which should be carefully reviewed prior to running the program. If you have Web servers serving up CGI scripts, Nikto can be an excellent resource for checking the security of these servers.
More information about Nikto can be found at the following URL: